Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RF55_1043 | RF55_12172 | A0A0J7L7M6 | A0A0J7KDC7 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.961 |
RF55_1043 | RF55_14325 | A0A0J7L7M6 | A0A0J7K8I1 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.961 |
RF55_1043 | RF55_18805 | A0A0J7L7M6 | A0A0J7K149 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Solute carrier family 23 member 1-like protein. | 0.702 |
RF55_1043 | RF55_1921 | A0A0J7L7M6 | A0A0J7L533 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family. | 0.461 |
RF55_1043 | RF55_2058 | A0A0J7L7M6 | A0A0J7L4Y9 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Uncharacterized protein. | 0.920 |
RF55_1043 | RF55_3529 | A0A0J7L7M6 | A0A0J7L0S6 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Dihydroorotate dehydrogenase. | 0.961 |
RF55_1043 | RF55_5787 | A0A0J7L7M6 | A0A0J7KUI0 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Cytochrome b5 reductase 4. | 0.897 |
RF55_1043 | RF55_779 | A0A0J7L7M6 | A0A0J7L8M6 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Vesicle transport protein got1b. | 0.971 |
RF55_1043 | RF55_9787 | A0A0J7L7M6 | A0A0J7KJ55 | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family. | 0.961 |
RF55_11791 | RF55_12172 | A0A0J7KEL4 | A0A0J7KDC7 | Thymidylate kinase. | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.418 |
RF55_11791 | RF55_1921 | A0A0J7KEL4 | A0A0J7L533 | Thymidylate kinase. | Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family. | 0.892 |
RF55_11791 | RF55_2058 | A0A0J7KEL4 | A0A0J7L4Y9 | Thymidylate kinase. | Uncharacterized protein. | 0.848 |
RF55_11791 | RF55_3529 | A0A0J7KEL4 | A0A0J7L0S6 | Thymidylate kinase. | Dihydroorotate dehydrogenase. | 0.418 |
RF55_11791 | RF55_779 | A0A0J7KEL4 | A0A0J7L8M6 | Thymidylate kinase. | Vesicle transport protein got1b. | 0.602 |
RF55_12172 | RF55_1043 | A0A0J7KDC7 | A0A0J7L7M6 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. | 0.961 |
RF55_12172 | RF55_11791 | A0A0J7KDC7 | A0A0J7KEL4 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Thymidylate kinase. | 0.418 |
RF55_12172 | RF55_14325 | A0A0J7KDC7 | A0A0J7K8I1 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.748 |
RF55_12172 | RF55_18805 | A0A0J7KDC7 | A0A0J7K149 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Solute carrier family 23 member 1-like protein. | 0.741 |
RF55_12172 | RF55_1921 | A0A0J7KDC7 | A0A0J7L533 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family. | 0.744 |
RF55_12172 | RF55_2058 | A0A0J7KDC7 | A0A0J7L4Y9 | Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Uncharacterized protein. | 0.884 |
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