Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PAN3 | RF55_11767 | A0A0J7L643 | A0A0J7N7S4 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] | Eukaryotic translation initiation factor 4e; Belongs to the eukaryotic initiation factor 4E family. | 0.633 |
| PAN3 | RF55_13579 | A0A0J7L643 | A0A0J7KA78 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] | Eukaryotic initiation factor 4a-ii; Belongs to the DEAD box helicase family. | 0.601 |
| PAN3 | RF55_1430 | A0A0J7L643 | A0A0J7P0Q6 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] | Polyadenylate-binding protein 1-like isoform 1 protein. | 0.974 |
| PAN3 | RF55_1578 | A0A0J7L643 | A0A0J7L568 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] | Polyadenylate-binding protein 1. | 0.974 |
| RF55_10220 | RF55_10582 | A0A0J7NBX7 | A0A0J7KHR7 | Nuclear cap-binding protein subunit 1-like protein. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | 0.998 |
| RF55_10220 | RF55_11767 | A0A0J7NBX7 | A0A0J7N7S4 | Nuclear cap-binding protein subunit 1-like protein. | Eukaryotic translation initiation factor 4e; Belongs to the eukaryotic initiation factor 4E family. | 0.935 |
| RF55_10220 | RF55_1274 | A0A0J7NBX7 | A0A0J7L706 | Nuclear cap-binding protein subunit 1-like protein. | Eukaryotic translation initiation factor 4 gamma 3. | 0.858 |
| RF55_10220 | RF55_13579 | A0A0J7NBX7 | A0A0J7KA78 | Nuclear cap-binding protein subunit 1-like protein. | Eukaryotic initiation factor 4a-ii; Belongs to the DEAD box helicase family. | 0.793 |
| RF55_10220 | RF55_1430 | A0A0J7NBX7 | A0A0J7P0Q6 | Nuclear cap-binding protein subunit 1-like protein. | Polyadenylate-binding protein 1-like isoform 1 protein. | 0.886 |
| RF55_10220 | RF55_1578 | A0A0J7NBX7 | A0A0J7L568 | Nuclear cap-binding protein subunit 1-like protein. | Polyadenylate-binding protein 1. | 0.886 |
| RF55_10220 | RF55_17629 | A0A0J7NBX7 | A0A0J7K2R6 | Nuclear cap-binding protein subunit 1-like protein. | Polyadenylate-binding protein-interacting protein 1. | 0.858 |
| RF55_10220 | RF55_6480 | A0A0J7NBX7 | A0A0J7KSW8 | Nuclear cap-binding protein subunit 1-like protein. | Eukaryotic peptide chain release factor gtp-binding subunit erf3a. | 0.521 |
| RF55_10582 | RF55_10220 | A0A0J7KHR7 | A0A0J7NBX7 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Nuclear cap-binding protein subunit 1-like protein. | 0.998 |
| RF55_10582 | RF55_11767 | A0A0J7KHR7 | A0A0J7N7S4 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Eukaryotic translation initiation factor 4e; Belongs to the eukaryotic initiation factor 4E family. | 0.728 |
| RF55_10582 | RF55_1274 | A0A0J7KHR7 | A0A0J7L706 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Eukaryotic translation initiation factor 4 gamma 3. | 0.837 |
| RF55_10582 | RF55_13579 | A0A0J7KHR7 | A0A0J7KA78 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Eukaryotic initiation factor 4a-ii; Belongs to the DEAD box helicase family. | 0.773 |
| RF55_10582 | RF55_1430 | A0A0J7KHR7 | A0A0J7P0Q6 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Polyadenylate-binding protein 1-like isoform 1 protein. | 0.906 |
| RF55_10582 | RF55_1578 | A0A0J7KHR7 | A0A0J7L568 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Polyadenylate-binding protein 1. | 0.906 |
| RF55_10582 | RF55_17629 | A0A0J7KHR7 | A0A0J7K2R6 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Polyadenylate-binding protein-interacting protein 1. | 0.837 |
| RF55_10582 | RF55_6278 | A0A0J7KHR7 | A0A0J7NMC1 | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] | Ataxin-2-like protein. | 0.639 |
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