STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_1833E3 ubiquitin-protein ligase. (777 aa)    
Predicted Functional Partners:
RF55_6722
Mothers against decapentaplegic-like protein.
    
 0.994
RF55_3489
Ubiquitin-40s ribosomal protein s27a-like protein.
    
 0.972
RF55_12618
Mothers against decapentaplegic-like protein.
    
 0.955
RF55_11805
Mothers against decapentaplegic homolog.
    
 0.943
RF55_2383
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.932
RF55_61
Mothers against decapentaplegic homolog.
   
 0.931
RF55_16079
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.901
RF55_8461
E3 ubiquitin-protein ligase cbl-b-like protein.
    
 0.887
RF55_127
Epidermal growth factor receptor.
    
 0.883
RF55_4734
Leucine-rich repeat serine threonine-protein kinase 1-like protein.
    
 0.862
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.