STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_20828Copia protein. (184 aa)    
Predicted Functional Partners:
RF55_10657
Fanconi anemia group m protein.
    
  0.664
RF55_18485
Copia protein.
  
     0.459
RF55_20124
Gag-pol polyprotein.
  
     0.454
RF55_17201
Copia protein.
  
     0.453
RF55_23177
Copia protein.
  
     0.442
RF55_13522
Copia protein.
  
     0.434
RF55_12013
Copia protein.
  
     0.429
RF55_5862
Copia protein.
  
     0.428
RF55_12887
Integrase core domain protein.
  
     0.425
RF55_15529
Retrovirus-related pol polyprotein from transposon tnt 1-94.
  
     0.416
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.