STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_12193Reverse transcriptase. (1045 aa)    
Predicted Functional Partners:
RF55_4734
Leucine-rich repeat serine threonine-protein kinase 1-like protein.
    
 0.678
RF55_7338
Putative atp-dependent rna helicase dhx34.
    
  0.533
RF55_3197
Brca1-associated ring domain protein 1-like protein.
    
  0.526
RF55_11627
28s ribosomal protein mitochondrial.
   
  0.497
RF55_13625
28s ribosomal protein mitochondrial.
    
  0.486
RF55_9802
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1-like protein.
    
  0.486
RF55_5114
28s ribosomal protein mitochondrial.
    
  0.484
RF55_4733
28s ribosomal protein mitochondrial.
    
  0.484
RF55_16511
28s ribosomal protein mitochondrial.
    
  0.483
RF55_12339
Pci domain-containing protein 2-like protein.
    
  0.483
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.