STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_11675Aspartyl-trna cytoplasmic. (603 aa)    
Predicted Functional Partners:
RF55_2919
Bifunctional aminoacyl-trna synthetase.
  
 0.999
RF55_12365
Tyrosine--tRNA ligase.
  
 0.995
RF55_1086
Methionyl-trna cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.983
RF55_3504
Putative glutaminyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.975
RF55_10211
Isoleucyl-trna cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.970
RF55_2563
annotation not available
   
 0.963
RF55_766
Arginyl-trna cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.960
RF55_767
Leucyl-trna cytoplasmic.
  
 0.960
RF55_10657
Fanconi anemia group m protein.
  
 0.903
RF55_13665
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.896
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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