STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_8726Platelet glycoprotein v. (101 aa)    
Predicted Functional Partners:
RF55_2791
Calcium homeostasis endoplasmic reticulum protein.
    
 0.778
RF55_7788
Peripheral plasma membrane protein cask.
    
  0.738
RF55_4941
Peripheral plasma membrane protein cask-like protein.
    
  0.738
RF55_4763
Elongation factor 1-gamma.
    
  0.675
RF55_1269
Latrophilin cirl-like isoform x7 protein; Belongs to the G-protein coupled receptor 2 family.
    
   0.628
RF55_2369
Small nuclear ribonucleoprotein Sm D3.
    
 0.599
RF55_21422
Small nuclear ribonucleoprotein f-like protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.598
RF55_6107
Small nuclear ribonucleoprotein-associated protein.
    
 0.596
RF55_22898
Uncharacterized protein.
    
 0.595
RF55_5516
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
  0.587
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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