STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_7642Multiple coagulation factor deficiency protein 2-like protein. (123 aa)    
Predicted Functional Partners:
RF55_12939
Protein ergic-53.
   
 0.965
RF55_5864
Protein ergic-53.
   
 0.965
RF55_4348
Vesicular integral-membrane protein vip36.
     
 0.657
RF55_7786
Protein transport protein sec31a.
     
 0.639
RF55_521
Protein sly1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.614
RF55_6582
Gtp-binding protein sar1; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.613
RF55_8581
Golgi snap receptor complex member 2.
   
 
  0.612
RF55_14293
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 
 0.606
RF55_8396
General vesicular transport factor p115.
   
 
  0.606
RF55_7811
Protein transport protein sec24c-like protein.
     
 0.602
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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