STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_2105Tudor domain-containing protein phf20l1. (299 aa)    
Predicted Functional Partners:
RF55_11342
Putative histone-binding protein caf1-like protein.
    
 0.998
RF55_4694
F-box-like wd repeat-containing protein tbl1xr1 protein.
    
 0.997
RF55_3151
Microspherule protein 1-like protein.
    
 0.988
RF55_9972
Kat8 regulatory nsl complex subunit 3-like isoform x1 protein.
    
 0.987
RF55_9800
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.987
RF55_8720
Kat8 regulatory nsl complex subunit 3-like isoform x2 protein.
    
 0.987
RF55_2185
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.987
RF55_2187
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.987
RF55_2747
Paired amphipathic helix protein sin3a.
    
 0.984
RF55_7405
Paired amphipathic helix protein sin3a.
    
 0.984
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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