STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_1794Lsm14 protein a. (543 aa)    
Predicted Functional Partners:
RF55_6006
Atp-dependent rna helicase me31b; Belongs to the DEAD box helicase family.
   
 
 0.995
RF55_5759
Mrna-decapping enzyme 2.
    
 
 0.967
RF55_9232
Enhancer of mrna-decapping protein 3.
    
 
 0.961
RF55_9956
Chromodomain-helicase-dna-binding protein 1.
   
 
 0.838
RF55_4572
Chromodomain-helicase-dna-binding protein 7.
   
 
 0.838
RF55_3238
Chromodomain-helicase-dna-binding protein 1.
   
 
 0.838
RF55_1725
Centrosomal protein.
   
 
 0.838
RF55_5900
Protein pat1 1-like protein.
   
 
 0.777
RF55_4345
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
    
 
 0.770
RF55_1578
Polyadenylate-binding protein 1.
    
 
 0.754
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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