STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA91694.1Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (369 aa)    
Predicted Functional Partners:
EFA91696.1
Identified by match to protein family HMM PF05523.
 
 0.993
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.946
EFA91695.1
Hypothetical protein.
 
     0.912
EFA91699.1
Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040.
  
    0.825
EFA91700.1
Hypothetical protein.
       0.824
EFA91701.1
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.824
EFA91749.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321.
 
 
 0.813
EFA91698.1
Hypothetical protein; Identified by glimmer; putative.
       0.755
EFA92423.1
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408.
 
 
 0.696
EFA91974.1
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
 
 0.609
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.