Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA90971.1DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. (109 aa)    
Predicted Functional Partners:
EFA90970.1
HipA-like C-terminal domain protein; Identified by match to protein family HMM PF07804; match to protein family HMM PF07805.
 
  
 0.925
EFA91783.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.760
EFA91616.1
HipA-like C-terminal domain protein; Identified by match to protein family HMM PF07804; match to protein family HMM PF07805.
 
  
 0.662
EFA92119.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.
  
     0.644
EFA92002.1
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155.
  
     0.630
EFA92066.1
Hypothetical protein.
  
     0.481
EFA90972.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.439
EFA90954.1
Identified by match to protein family HMM PF07980.
  
     0.429
EFA91511.1
Hypothetical protein.
  
     0.425
EFA92919.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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