STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA91657.1Hypothetical protein. (264 aa)    
Predicted Functional Partners:
EFA91656.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
       0.795
EFA91654.1
Hypothetical protein; Identified by glimmer; putative.
  
    0.620
EFA91655.1
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.531
cbiX
Sirohydrochlorin cobaltochelatase; Identified by match to protein family HMM PF01903.
 
 
 0.524
EFA92240.1
Identified by match to protein family HMM PF01578.
  
    0.508
hemG
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.489
trkA-2
TrkA C-terminal domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808.
  
    0.446
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
   
 0.410
EFA93121.1
Identified by match to protein family HMM PF01578.
 
    0.405
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.