STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA92345.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
EFA92344.1
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.838
EFA92346.1
Nucleoside transporter; Identified by match to protein family HMM PF03825; match to protein family HMM PF07690.
       0.838
EFA92341.1
Efflux ABC transporter, permease protein.
       0.685
EFA92342.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.685
EFA92343.1
Hypothetical protein.
       0.685
EFA92357.1
GAD-like protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08906.
  
     0.681
EFA92158.1
Identified by match to protein family HMM PF08887; match to protein family HMM PF08906.
  
     0.657
EFA92232.1
Hypothetical protein.
  
     0.613
EFA90923.1
HTH domain protein; Identified by match to protein family HMM PF08279.
  
     0.584
EFA91036.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.