STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA90935.1Hypothetical protein. (76 aa)    
Predicted Functional Partners:
EFA90936.1
Hypothetical protein.
 
    0.938
EFA91054.1
Toxin-antitoxin system, toxin component, RelE family; Identified by match to protein family HMM PF05973.
  
     0.614
EFA90934.1
Hypothetical protein.
       0.514
EFA91055.1
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.509
EFA92862.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.432
EFA91041.1
Hypothetical protein.
  
     0.416
EFA91166.1
Divergent AAA domain protein; Identified by match to protein family HMM PF04326.
  
     0.401
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.