STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA90859.1Phosphate-selective porin O and P. (359 aa)    
Predicted Functional Partners:
EFA91956.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.
  
     0.755
EFA91780.1
Site-specific recombinase, phage integrase family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
     0.748
EFA91750.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.737
EFA92341.1
Efflux ABC transporter, permease protein.
  
     0.733
EFA92095.1
Hypothetical protein.
  
     0.625
EFA92342.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.621
EFA91392.1
Hypothetical protein.
  
     0.553
EFA93093.1
Hypothetical protein.
  
     0.526
EFA90881.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.525
EFA91796.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.