STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrdAPenicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. (616 aa)    
Predicted Functional Partners:
EFA91127.1
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
 
 0.986
EFA91131.1
Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 
 0.954
mreC
Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085.
 
 
 0.948
EFA92208.1
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
 
 0.887
EFA92328.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
 
 
 0.837
EFA92212.1
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793.
  
  
 
0.816
EFA92205.1
Hypothetical protein.
  
 
 0.797
EFA91885.1
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905.
  
  
 
0.781
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
       0.780
EFA92983.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
 
 
 0.779
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.