STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traK-3Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781; Bacteroides conjugative transposon TraK protein. (207 aa)    
Predicted Functional Partners:
EFA92559.1
Hypothetical protein.
 
   
 0.934
traJ-2
Conjugative transposon TraJ protein; Identified by match to protein family HMM PF07863; match to protein family HMM TIGR03782; Bacteroides conjugative transposon TraJ protein.
   
 0.932
traG-3
Conjugation system ATPase, TraG family; Identified by match to protein family HMM TIGR03783; Bacteroides conjugation system ATPase, TraG family.
 
  
 0.920
traM-3
Conjugative transposon TraM protein; Identified by match to protein family HMM TIGR03779; Bacteroides conjugative transposon TraM protein.
 
   
 0.917
EFA92563.1
Conjugative transposon protein TraE.
 
   
 0.895
traN-3
Conjugative transposon TraN protein; Identified by match to protein family HMM TIGR03780; Bacteroides conjugative transposon TraN protein.
 
   
 0.894
EFA92562.1
Hypothetical protein.
 
     0.890
traG-2
Conjugation system ATPase, TraG family; Identified by match to protein family HMM TIGR03783; Bacteroides conjugation system ATPase, TraG family.
 
  
 0.835
traG
Conjugation system ATPase, TraG family; Identified by match to protein family HMM TIGR03783; Bacteroides conjugation system ATPase, TraG family.
 
  
 0.806
EFA92571.1
TraG family protein.
 
     0.802
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.