Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFA91363.1 | EFA92230.1 | HMPREF0650_0632 | HMPREF0650_1467 | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.619 |
| EFA91363.1 | rpmB | HMPREF0650_0632 | HMPREF0650_0082 | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. | 0.521 |
| EFA91363.1 | rpsN | HMPREF0650_0632 | HMPREF0650_2460 | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.542 |
| EFA91990.1 | EFA92230.1 | HMPREF0650_1560 | HMPREF0650_1467 | Identified by match to protein family HMM PF04480. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.400 |
| EFA91990.1 | fhs | HMPREF0650_1560 | HMPREF0650_1468 | Identified by match to protein family HMM PF04480. | Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. | 0.931 |
| EFA92229.1 | EFA92230.1 | HMPREF0650_1466 | HMPREF0650_1467 | Hypothetical protein. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.553 |
| EFA92230.1 | EFA91363.1 | HMPREF0650_1467 | HMPREF0650_0632 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.619 |
| EFA92230.1 | EFA91990.1 | HMPREF0650_1467 | HMPREF0650_1560 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Identified by match to protein family HMM PF04480. | 0.400 |
| EFA92230.1 | EFA92229.1 | HMPREF0650_1467 | HMPREF0650_1466 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Hypothetical protein. | 0.553 |
| EFA92230.1 | EFA93049.1 | HMPREF0650_1467 | HMPREF0650_1085 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Hypothetical protein. | 0.576 |
| EFA92230.1 | fhs | HMPREF0650_1467 | HMPREF0650_1468 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. | 0.440 |
| EFA92230.1 | map | HMPREF0650_1467 | HMPREF0650_0079 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.765 |
| EFA92230.1 | rpmB | HMPREF0650_1467 | HMPREF0650_0082 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. | 0.568 |
| EFA92230.1 | rpmG | HMPREF0650_1467 | HMPREF0650_0083 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. | 0.500 |
| EFA92230.1 | rpsN | HMPREF0650_1467 | HMPREF0650_2460 | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.623 |
| EFA93049.1 | EFA92230.1 | HMPREF0650_1085 | HMPREF0650_1467 | Hypothetical protein. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.576 |
| fhs | EFA91990.1 | HMPREF0650_1468 | HMPREF0650_1560 | Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. | Identified by match to protein family HMM PF04480. | 0.931 |
| fhs | EFA92230.1 | HMPREF0650_1468 | HMPREF0650_1467 | Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.440 |
| map | EFA92230.1 | HMPREF0650_0079 | HMPREF0650_1467 | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. | 0.765 |
| map | rpmB | HMPREF0650_0079 | HMPREF0650_0082 | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. | 0.663 |
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