STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA91258.1Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922. (689 aa)    
Predicted Functional Partners:
glgP
Alpha-glucan phosphorylase; Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.
 
 0.987
EFA91626.1
Starch synthase catalytic domain protein; Identified by match to protein family HMM PF08323.
 
 
 0.983
pulA
Pullulanase, type I; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02104; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.981
EFA92713.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
 0.963
EFA93221.1
Putative 4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446.
 
 
 0.935
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.915
otsB
Trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.
  
 0.872
EFA93213.1
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
 
 
 0.862
EFA91602.1
Starch synthase; Identified by match to protein family HMM PF05693.
  
 0.852
EFA92712.1
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065.
 
  
 0.819
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.