STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA91964.1TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (1103 aa)    
Predicted Functional Partners:
EFA91965.1
Hypothetical protein.
 
   0.962
EFA91966.1
Hypothetical protein.
 
    0.936
EFA91967.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer.
 
    0.933
EFA92919.1
Hypothetical protein.
  
 
   0.852
EFA91832.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07980.
 
   0.835
EFA91148.1
Identified by match to protein family HMM PF07980.
 
   0.822
EFA91511.1
Hypothetical protein.
  
 
   0.775
EFA92867.1
Identified by match to protein family HMM PF07980.
  
 
   0.769
EFA91968.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer.
  
    0.715
EFA91937.1
Identified by match to protein family HMM PF07980.
  
 
   0.693
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.