STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonB_1-5TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (688 aa)    
Predicted Functional Partners:
EFA91583.1
Hypothetical protein.
  
 
   0.594
EFA92382.1
Hypothetical protein.
       0.565
EFA93037.1
Identified by match to protein family HMM PF07980.
  
 
   0.513
tonB_2-6
TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00593.
  
     0.487
EFA92791.1
Hypothetical protein.
  
     0.471
EFA91036.1
Hypothetical protein.
  
 
   0.458
EFA92174.1
Identified by match to protein family HMM PF07980.
  
 
   0.445
EFA91275.1
Hypothetical protein.
  
    0.442
EFA91453.1
Identified by match to protein family HMM PF07980.
  
 
   0.410
EFA91584.1
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.406
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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