Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFA91059.1 | EFA91453.1 | HMPREF0650_0896 | HMPREF0650_1934 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | Identified by match to protein family HMM PF07980. | 0.440 |
EFA91059.1 | EFA91583.1 | HMPREF0650_0896 | HMPREF0650_2479 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | Hypothetical protein. | 0.440 |
EFA91059.1 | EFA92174.1 | HMPREF0650_0896 | HMPREF0650_2195 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | Identified by match to protein family HMM PF07980. | 0.532 |
EFA91059.1 | EFA93037.1 | HMPREF0650_0896 | HMPREF0650_1073 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | Identified by match to protein family HMM PF07980. | 0.440 |
EFA91059.1 | infB | HMPREF0650_0896 | HMPREF0650_0934 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.880 |
EFA91059.1 | tonB-4 | HMPREF0650_0896 | HMPREF0650_2316 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.824 |
EFA91059.1 | tonB_1-5 | HMPREF0650_0896 | HMPREF0650_1981 | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.514 |
EFA91453.1 | EFA91059.1 | HMPREF0650_1934 | HMPREF0650_0896 | Identified by match to protein family HMM PF07980. | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | 0.440 |
EFA91453.1 | EFA93037.1 | HMPREF0650_1934 | HMPREF0650_1073 | Identified by match to protein family HMM PF07980. | Identified by match to protein family HMM PF07980. | 0.708 |
EFA91453.1 | tonB_1-5 | HMPREF0650_1934 | HMPREF0650_1981 | Identified by match to protein family HMM PF07980. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.471 |
EFA91583.1 | EFA91059.1 | HMPREF0650_2479 | HMPREF0650_0896 | Hypothetical protein. | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | 0.440 |
EFA91583.1 | EFA92791.1 | HMPREF0650_2479 | HMPREF0650_0261 | Hypothetical protein. | Hypothetical protein. | 0.701 |
EFA91583.1 | tonB_1-5 | HMPREF0650_2479 | HMPREF0650_1981 | Hypothetical protein. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.636 |
EFA91583.1 | tonB_2-6 | HMPREF0650_2479 | HMPREF0650_1897 | Hypothetical protein. | TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00593. | 0.728 |
EFA92174.1 | EFA91059.1 | HMPREF0650_2195 | HMPREF0650_0896 | Identified by match to protein family HMM PF07980. | Identified by match to protein family HMM PF00691; match to protein family HMM PF07676. | 0.532 |
EFA92174.1 | tonB_1-5 | HMPREF0650_2195 | HMPREF0650_1981 | Identified by match to protein family HMM PF07980. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.503 |
EFA92382.1 | tonB_1-5 | HMPREF0650_1982 | HMPREF0650_1981 | Hypothetical protein. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.565 |
EFA92791.1 | EFA91583.1 | HMPREF0650_0261 | HMPREF0650_2479 | Hypothetical protein. | Hypothetical protein. | 0.701 |
EFA92791.1 | tonB_1-5 | HMPREF0650_0261 | HMPREF0650_1981 | Hypothetical protein. | TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. | 0.471 |
EFA92791.1 | tonB_2-6 | HMPREF0650_0261 | HMPREF0650_1897 | Hypothetical protein. | TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00593. | 0.553 |
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