Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA92390.1Identified by match to protein family HMM PF02638. (868 aa)    
Predicted Functional Partners:
EFA92388.1
Tat pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
 
    0.856
EFA92389.1
Identified by match to protein family HMM PF03629.
    0.833
EFA92393.1
SusD family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07980.
 
     0.828
tonB_2-7
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.808
EFA92395.1
Tat pathway signal sequence domain protein.
 
    0.748
EFA92397.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
     0.722
EFA91937.1
Identified by match to protein family HMM PF07980.
  
     0.716
EFA92391.1
Identified by match to protein family HMM PF02638.
 
    
0.643
EFA91936.1
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.625
EFA92155.1
Ankyrin repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00023.
    
 
 0.580
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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