Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFA92395.1Tat pathway signal sequence domain protein. (356 aa)    
Predicted Functional Partners:
EFA92397.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
 
    0.938
EFA92396.1
N-acylglucosamine 2-epimerase; Identified by match to protein family HMM PF07221.
 
     0.936
EFA92393.1
SusD family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07980.
 
   0.892
tonB_2-7
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.882
EFA92391.1
Identified by match to protein family HMM PF02638.
 
     0.830
EFA92390.1
Identified by match to protein family HMM PF02638.
 
    0.748
EFA91937.1
Identified by match to protein family HMM PF07980.
  
   0.720
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 
 0.532
EFA92507.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
   
 
 0.502
EFA92049.1
Identified by match to protein family HMM PF00682.
  
    0.478
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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