Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA92403.1Identified by match to protein family HMM PF02470. (300 aa)    
Predicted Functional Partners:
EFA92179.1
Identified by match to protein family HMM PF02405.
 
 0.991
EFA92180.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.986
EFA92404.1
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.
       0.741
EFA92194.1
Identified by match to protein family HMM PF00691.
 
 
   0.699
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
   
   0.685
EFA92406.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.650
EFA93131.1
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
    0.594
EFA93239.1
Hypothetical protein.
  
     0.590
EFA93049.1
Hypothetical protein.
 
     0.543
EFA90911.1
PASTA domain protein; Identified by match to protein family HMM PF03793.
  
   
 0.540
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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