Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFA92404.1N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520. (461 aa)    
Predicted Functional Partners:
EFA92403.1
Identified by match to protein family HMM PF02470.
       0.741
EFA92224.1
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
 
   0.704
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.697
EFA92406.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.696
EFA91189.1
Peptidase, S54 family; Identified by match to protein family HMM PF01694.
   
   0.583
EFA91017.1
Hypothetical protein.
    
   0.574
EFA91265.1
Hypothetical protein.
    
   0.574
EFA92407.1
Identified by match to protein family HMM PF00881; Belongs to the flavin oxidoreductase frp family.
  
    0.559
EFA92328.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
 
 
 0.523
EFA90864.1
Peptidase, M23 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
   
 0.432
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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