STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA92416.1Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (409 aa)    
Predicted Functional Partners:
EFA92417.1
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
 
    
0.764
EFA92418.1
Hypothetical protein.
       0.650
EFA92722.1
Bacterial mobilization protein MobC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05713.
  
     0.614
EFA91636.1
Hypothetical protein.
  
     0.585
EFA92721.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
  
     0.566
EFA91633.1
Hypothetical protein.
  
     0.556
EFA91632.1
DNA binding domain, excisionase family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.553
EFA92152.1
Hypothetical protein.
  
     0.516
EFA92724.1
Hypothetical protein.
  
     0.493
EFA93051.1
DNA binding domain, excisionase family.
  
     0.454
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.