Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA92442.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
EFA92441.1
Peptidase S24-like protein; Identified by match to protein family HMM PF00717.
 
     0.940
EFA92440.1
Hypothetical protein.
 
     0.926
EFA91750.1
Hypothetical protein; Identified by glimmer; putative.
 
     0.795
EFA92912.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.743
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
   
 
 0.738
EFA91796.1
Hypothetical protein.
  
     0.715
EFA93093.1
Hypothetical protein.
  
     0.644
EFA92439.1
Hypothetical protein.
       0.635
EFA92055.1
Hypothetical protein.
  
     0.597
EFA93264.1
Hypothetical protein.
  
     0.595
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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