Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFA90865.1Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (224 aa)    
Predicted Functional Partners:
EFA91679.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
     0.976
EFA90866.1
Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326.
 
     0.720
yidC
Membrane protein insertase, YidC/Oxa1 family domain protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
       0.621
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.621
EFA91199.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.603
EFA91602.1
Starch synthase; Identified by match to protein family HMM PF05693.
  
    0.597
tonB_2
TonB-dependent receptor; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
     0.583
EFA93046.1
Peptidase, C69 family; Identified by match to protein family HMM PF03577.
  
     0.573
EFA92972.1
Oligopeptide transporter, OPT family; Identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733.
  
     0.569
EFA90848.1
Putative cytochrome d ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322.
  
    0.500
Your Current Organism:
Prevotella buccalis
NCBI taxonomy Id: 679190
Other names: P. buccalis ATCC 35310, Prevotella buccalis ATCC 35310, Prevotella buccalis str. ATCC 35310, Prevotella buccalis strain ATCC 35310
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