Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05534.1 | EFC05535.1 | HMPREF9013_1237 | HMPREF9013_1238 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.980 |
| EFC05534.1 | EFC05819.1 | HMPREF9013_1237 | HMPREF9013_0010 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | 0.456 |
| EFC05534.1 | EFC05820.1 | HMPREF9013_1237 | HMPREF9013_0011 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.605 |
| EFC05534.1 | EFC05821.1 | HMPREF9013_1237 | HMPREF9013_0012 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.598 |
| EFC05534.1 | EFC05822.1 | HMPREF9013_1237 | HMPREF9013_0013 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. | 0.655 |
| EFC05534.1 | msrA | HMPREF9013_1237 | HMPREF9013_1398 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.501 |
| EFC05535.1 | EFC05534.1 | HMPREF9013_1238 | HMPREF9013_1237 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | 0.980 |
| EFC05535.1 | EFC05819.1 | HMPREF9013_1238 | HMPREF9013_0010 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | 0.456 |
| EFC05535.1 | EFC05820.1 | HMPREF9013_1238 | HMPREF9013_0011 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.605 |
| EFC05535.1 | EFC05821.1 | HMPREF9013_1238 | HMPREF9013_0012 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.598 |
| EFC05535.1 | EFC05822.1 | HMPREF9013_1238 | HMPREF9013_0013 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. | 0.655 |
| EFC05535.1 | msrA | HMPREF9013_1238 | HMPREF9013_1398 | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.501 |
| EFC05680.1 | EFC05819.1 | HMPREF9013_0285 | HMPREF9013_0010 | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | 0.456 |
| EFC05680.1 | EFC05820.1 | HMPREF9013_0285 | HMPREF9013_0011 | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.605 |
| EFC05680.1 | EFC05821.1 | HMPREF9013_0285 | HMPREF9013_0012 | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.598 |
| EFC05680.1 | EFC05822.1 | HMPREF9013_0285 | HMPREF9013_0013 | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. | 0.655 |
| EFC05680.1 | msrA | HMPREF9013_0285 | HMPREF9013_1398 | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.501 |
| EFC05819.1 | EFC05534.1 | HMPREF9013_0010 | HMPREF9013_1237 | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005. | 0.456 |
| EFC05819.1 | EFC05535.1 | HMPREF9013_0010 | HMPREF9013_1238 | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.456 |
| EFC05819.1 | EFC05680.1 | HMPREF9013_0010 | HMPREF9013_0285 | ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496. | Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361. | 0.456 |
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