STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05852.1Hypothetical protein; Identified by glimmer; putative. (542 aa)    
Predicted Functional Partners:
EFC06017.1
Repeat protein; Identified by match to protein family HMM PF07523; match to protein family HMM PF09479; Listeria/Bacterioides repeat protein.
    
 0.835
EFC06111.1
Hypothetical protein.
    
 0.835
EFC05630.1
Listeria/Bacterioides repeat protein.
    
 0.835
EFC05851.1
Identified by match to protein family HMM PF03458.
       0.752
EFC05994.1
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family.
    
 0.749
EFC05188.1
Hypothetical protein; Identified by glimmer; putative.
    
 0.652
EFC05853.1
Hypothetical protein.
       0.648
EFC06115.1
Polysaccharide deacetylase; Identified by match to protein family HMM PF01522.
    
 0.644
EFC06483.1
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.623
EFC05850.1
Identified by match to protein family HMM PF00436; match to protein family HMM PF01336.
       0.614
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.