Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05186.1 | EFC05892.1 | HMPREF9013_0467 | HMPREF9013_0090 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family. | Identified by match to protein family HMM PF01569. | 0.952 |
| EFC05186.1 | pgsA | HMPREF9013_0467 | HMPREF9013_0769 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.437 |
| EFC05186.1 | rplF | HMPREF9013_0467 | HMPREF9013_0913 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.988 |
| EFC05288.1 | EFC05290.1 | HMPREF9013_0572 | HMPREF9013_0574 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | 0.999 |
| EFC05288.1 | EFC05291.1 | HMPREF9013_0572 | HMPREF9013_0575 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.999 |
| EFC05288.1 | EFC05892.1 | HMPREF9013_0572 | HMPREF9013_0090 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF01569. | 0.780 |
| EFC05290.1 | EFC05288.1 | HMPREF9013_0574 | HMPREF9013_0572 | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.999 |
| EFC05290.1 | EFC05291.1 | HMPREF9013_0574 | HMPREF9013_0575 | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.999 |
| EFC05290.1 | EFC05892.1 | HMPREF9013_0574 | HMPREF9013_0090 | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | Identified by match to protein family HMM PF01569. | 0.755 |
| EFC05291.1 | EFC05288.1 | HMPREF9013_0575 | HMPREF9013_0572 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.999 |
| EFC05291.1 | EFC05290.1 | HMPREF9013_0575 | HMPREF9013_0574 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | 0.999 |
| EFC05291.1 | EFC05892.1 | HMPREF9013_0575 | HMPREF9013_0090 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | Identified by match to protein family HMM PF01569. | 0.829 |
| EFC05892.1 | EFC05186.1 | HMPREF9013_0090 | HMPREF9013_0467 | Identified by match to protein family HMM PF01569. | AMP-binding enzyme; Identified by match to protein family HMM PF00501; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.952 |
| EFC05892.1 | EFC05288.1 | HMPREF9013_0090 | HMPREF9013_0572 | Identified by match to protein family HMM PF01569. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.780 |
| EFC05892.1 | EFC05290.1 | HMPREF9013_0090 | HMPREF9013_0574 | Identified by match to protein family HMM PF01569. | V-type ATPase 116kDa subunit family protein; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family. | 0.755 |
| EFC05892.1 | EFC05291.1 | HMPREF9013_0090 | HMPREF9013_0575 | Identified by match to protein family HMM PF01569. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.829 |
| EFC05892.1 | EFC05966.1 | HMPREF9013_0090 | HMPREF9013_0168 | Identified by match to protein family HMM PF01569. | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | 0.634 |
| EFC05892.1 | EFC05996.1 | HMPREF9013_0090 | HMPREF9013_0199 | Identified by match to protein family HMM PF01569. | Identified by match to protein family HMM PF03009. | 0.873 |
| EFC05892.1 | guaC | HMPREF9013_0090 | HMPREF9013_0091 | Identified by match to protein family HMM PF01569. | GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 2 subfamily. | 0.734 |
| EFC05892.1 | pgsA | HMPREF9013_0090 | HMPREF9013_0769 | Identified by match to protein family HMM PF01569. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.632 |
page 1 of 2