arcA protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

arcA

Putative arginine deiminase; Identified by match to protein family HMM PF02274. (409 aa)

Predicted Functional Partners:

argF

0.998

arcC

0.960

EFC05898.1

0.826

EFC05417.1

0.789

argS

0.635

EFC05416.1

0.586

EFC05419.1

0.586

EFC06256.1

0.581

EFC05353.1

0.581

EFC05418.1

0.578

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05353.1	EFC05418.1	HMPREF9013_1378	HMPREF9013_0354	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	0.599
EFC05353.1	arcA	HMPREF9013_1378	HMPREF9013_0094	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Putative arginine deiminase; Identified by match to protein family HMM PF02274.	0.581
EFC05353.1	argF	HMPREF9013_1378	HMPREF9013_0095	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.609
EFC05416.1	EFC05417.1	HMPREF9013_0352	HMPREF9013_0353	Amidinotransferase; Identified by match to protein family HMM PF02274.	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	0.634
EFC05416.1	EFC05418.1	HMPREF9013_0352	HMPREF9013_0354	Amidinotransferase; Identified by match to protein family HMM PF02274.	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	0.686
EFC05416.1	arcA	HMPREF9013_0352	HMPREF9013_0094	Amidinotransferase; Identified by match to protein family HMM PF02274.	Putative arginine deiminase; Identified by match to protein family HMM PF02274.	0.586
EFC05416.1	argF	HMPREF9013_0352	HMPREF9013_0095	Amidinotransferase; Identified by match to protein family HMM PF02274.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.538
EFC05417.1	EFC05416.1	HMPREF9013_0353	HMPREF9013_0352	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Amidinotransferase; Identified by match to protein family HMM PF02274.	0.634
EFC05417.1	EFC05418.1	HMPREF9013_0353	HMPREF9013_0354	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	0.567
EFC05417.1	EFC05419.1	HMPREF9013_0353	HMPREF9013_0355	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Amidinotransferase; Identified by match to protein family HMM PF02274.	0.582
EFC05417.1	arcA	HMPREF9013_0353	HMPREF9013_0094	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Putative arginine deiminase; Identified by match to protein family HMM PF02274.	0.789
EFC05417.1	arcC	HMPREF9013_0353	HMPREF9013_0096	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Carbamate kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; Belongs to the carbamate kinase family.	0.437
EFC05417.1	argF	HMPREF9013_0353	HMPREF9013_0095	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.567
EFC05418.1	EFC05353.1	HMPREF9013_0354	HMPREF9013_1378	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	0.599
EFC05418.1	EFC05416.1	HMPREF9013_0354	HMPREF9013_0352	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Amidinotransferase; Identified by match to protein family HMM PF02274.	0.686
EFC05418.1	EFC05417.1	HMPREF9013_0354	HMPREF9013_0353	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845.	0.567
EFC05418.1	EFC05419.1	HMPREF9013_0354	HMPREF9013_0355	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Amidinotransferase; Identified by match to protein family HMM PF02274.	0.836
EFC05418.1	EFC06256.1	HMPREF9013_0354	HMPREF9013_0959	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	0.614
EFC05418.1	arcA	HMPREF9013_0354	HMPREF9013_0094	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Putative arginine deiminase; Identified by match to protein family HMM PF02274.	0.578
EFC05418.1	argF	HMPREF9013_0354	HMPREF9013_0095	Alanine racemase domain protein; Identified by match to protein family HMM PF01168.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.586