Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05306.1 | EFC05920.1 | HMPREF9013_0591 | HMPREF9013_0120 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.503 |
| EFC05306.1 | dinB | HMPREF9013_0591 | HMPREF9013_0398 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.476 |
| EFC05306.1 | dnaN | HMPREF9013_0591 | HMPREF9013_1108 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.565 |
| EFC05306.1 | mutM | HMPREF9013_0591 | HMPREF9013_0712 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.495 |
| EFC05306.1 | nth | HMPREF9013_0591 | HMPREF9013_0777 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.628 |
| EFC05306.1 | polA | HMPREF9013_0591 | HMPREF9013_0713 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.881 |
| EFC05306.1 | recX | HMPREF9013_0591 | HMPREF9013_0562 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.633 |
| EFC05306.1 | xth | HMPREF9013_0591 | HMPREF9013_1379 | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633. | 0.502 |
| EFC05859.1 | EFC05920.1 | HMPREF9013_0053 | HMPREF9013_0120 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.789 |
| EFC05859.1 | polA | HMPREF9013_0053 | HMPREF9013_0713 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.434 |
| EFC05920.1 | EFC05306.1 | HMPREF9013_0120 | HMPREF9013_0591 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Putative single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. | 0.503 |
| EFC05920.1 | EFC05859.1 | HMPREF9013_0120 | HMPREF9013_0053 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.789 |
| EFC05920.1 | dinB | HMPREF9013_0120 | HMPREF9013_0398 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.496 |
| EFC05920.1 | dnaN | HMPREF9013_0120 | HMPREF9013_1108 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.789 |
| EFC05920.1 | msrA | HMPREF9013_0120 | HMPREF9013_1398 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.571 |
| EFC05920.1 | mutM | HMPREF9013_0120 | HMPREF9013_0712 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.455 |
| EFC05920.1 | nth | HMPREF9013_0120 | HMPREF9013_0777 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.776 |
| EFC05920.1 | polA | HMPREF9013_0120 | HMPREF9013_0713 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.528 |
| EFC05920.1 | recX | HMPREF9013_0120 | HMPREF9013_0562 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.468 |
| EFC05920.1 | xth | HMPREF9013_0120 | HMPREF9013_1379 | Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633. | 0.993 |
page 1 of 4