EFC05930.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFC05930.1

ABC-2 type transporter; Identified by match to protein family HMM PF01061. (249 aa)

Predicted Functional Partners:

EFC05931.1

0.977

EFC05932.1

0.950

EFC05951.1

0.783

EFC05950.1

0.709

EFC05952.1

0.703

EFC05158.1

0.670

EFC05953.1

0.626

EFC05172.1

0.604

EFC05175.1

0.604

EFC05300.1

0.604

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05158.1	EFC05172.1	HMPREF9013_0438	HMPREF9013_0453	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.437
EFC05158.1	EFC05175.1	HMPREF9013_0438	HMPREF9013_0456	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.417
EFC05158.1	EFC05930.1	HMPREF9013_0438	HMPREF9013_0132	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	0.670
EFC05158.1	EFC05931.1	HMPREF9013_0438	HMPREF9013_0133	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.413
EFC05172.1	EFC05158.1	HMPREF9013_0453	HMPREF9013_0438	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.437
EFC05172.1	EFC05930.1	HMPREF9013_0453	HMPREF9013_0132	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	0.604
EFC05175.1	EFC05158.1	HMPREF9013_0456	HMPREF9013_0438	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.417
EFC05175.1	EFC05930.1	HMPREF9013_0456	HMPREF9013_0132	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	0.604
EFC05300.1	EFC05930.1	HMPREF9013_0584	HMPREF9013_0132	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	0.604
EFC05930.1	EFC05158.1	HMPREF9013_0132	HMPREF9013_0438	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.670
EFC05930.1	EFC05172.1	HMPREF9013_0132	HMPREF9013_0453	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.604
EFC05930.1	EFC05175.1	HMPREF9013_0132	HMPREF9013_0456	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.604
EFC05930.1	EFC05300.1	HMPREF9013_0132	HMPREF9013_0584	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.604
EFC05930.1	EFC05931.1	HMPREF9013_0132	HMPREF9013_0133	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.977
EFC05930.1	EFC05932.1	HMPREF9013_0132	HMPREF9013_0134	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	Transcriptional regulator, AbrB family; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.	0.950
EFC05930.1	EFC05950.1	HMPREF9013_0132	HMPREF9013_0152	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.709
EFC05930.1	EFC05951.1	HMPREF9013_0132	HMPREF9013_0153	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	Hypothetical protein.	0.783
EFC05930.1	EFC05952.1	HMPREF9013_0132	HMPREF9013_0154	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	0.703
EFC05930.1	EFC05953.1	HMPREF9013_0132	HMPREF9013_0155	ABC-2 type transporter; Identified by match to protein family HMM PF01061.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.	0.626
EFC05931.1	EFC05158.1	HMPREF9013_0133	HMPREF9013_0438	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.413