Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05675.1 | EFC05944.1 | HMPREF9013_0280 | HMPREF9013_0146 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.606 |
| EFC05675.1 | EFC06261.1 | HMPREF9013_0280 | HMPREF9013_0964 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | 0.645 |
| EFC05675.1 | coaBC | HMPREF9013_0280 | HMPREF9013_0145 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521. | 0.608 |
| EFC05942.1 | EFC05944.1 | HMPREF9013_0143 | HMPREF9013_0146 | Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.580 |
| EFC05942.1 | coaBC | HMPREF9013_0143 | HMPREF9013_0145 | Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040. | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521. | 0.580 |
| EFC05942.1 | coaX | HMPREF9013_0143 | HMPREF9013_0147 | Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040. | Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. | 0.581 |
| EFC05944.1 | EFC05675.1 | HMPREF9013_0146 | HMPREF9013_0280 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | 0.606 |
| EFC05944.1 | EFC05942.1 | HMPREF9013_0146 | HMPREF9013_0143 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040. | 0.580 |
| EFC05944.1 | EFC06261.1 | HMPREF9013_0146 | HMPREF9013_0964 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | 0.483 |
| EFC05944.1 | coaBC | HMPREF9013_0146 | HMPREF9013_0145 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521. | 0.915 |
| EFC05944.1 | coaD | HMPREF9013_0146 | HMPREF9013_0208 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.573 |
| EFC05944.1 | coaE | HMPREF9013_0146 | HMPREF9013_0711 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.637 |
| EFC05944.1 | coaX | HMPREF9013_0146 | HMPREF9013_0147 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. | 0.905 |
| EFC05944.1 | dut | HMPREF9013_0146 | HMPREF9013_0164 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.743 |
| EFC05944.1 | tmk | HMPREF9013_0146 | HMPREF9013_1083 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.598 |
| EFC06261.1 | EFC05675.1 | HMPREF9013_0964 | HMPREF9013_0280 | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | 0.645 |
| EFC06261.1 | EFC05944.1 | HMPREF9013_0964 | HMPREF9013_0146 | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.483 |
| EFC06261.1 | coaBC | HMPREF9013_0964 | HMPREF9013_0145 | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521. | 0.650 |
| EFC06261.1 | metK | HMPREF9013_0964 | HMPREF9013_0022 | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. | Methionine adenosyltransferase; Identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034; Belongs to the AdoMet synthase family. | 0.688 |
| coaBC | EFC05675.1 | HMPREF9013_0145 | HMPREF9013_0280 | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521. | Aminotransferase, class V; Identified by match to protein family HMM PF00266. | 0.608 |
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