Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05630.1 | EFC05951.1 | HMPREF9013_1335 | HMPREF9013_0153 | Listeria/Bacterioides repeat protein. | Hypothetical protein. | 0.553 |
| EFC05630.1 | EFC05952.1 | HMPREF9013_1335 | HMPREF9013_0154 | Listeria/Bacterioides repeat protein. | 4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. | 0.707 |
| EFC05630.1 | EFC05953.1 | HMPREF9013_1335 | HMPREF9013_0155 | Listeria/Bacterioides repeat protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.690 |
| EFC05930.1 | EFC05931.1 | HMPREF9013_0132 | HMPREF9013_0133 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.977 |
| EFC05930.1 | EFC05950.1 | HMPREF9013_0132 | HMPREF9013_0152 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | 0.709 |
| EFC05930.1 | EFC05951.1 | HMPREF9013_0132 | HMPREF9013_0153 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | Hypothetical protein. | 0.783 |
| EFC05930.1 | EFC05952.1 | HMPREF9013_0132 | HMPREF9013_0154 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. | 0.703 |
| EFC05930.1 | EFC05953.1 | HMPREF9013_0132 | HMPREF9013_0155 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.626 |
| EFC05931.1 | EFC05930.1 | HMPREF9013_0133 | HMPREF9013_0132 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.977 |
| EFC05931.1 | EFC05950.1 | HMPREF9013_0133 | HMPREF9013_0152 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | 0.409 |
| EFC05931.1 | EFC05952.1 | HMPREF9013_0133 | HMPREF9013_0154 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. | 0.540 |
| EFC05931.1 | EFC05953.1 | HMPREF9013_0133 | HMPREF9013_0155 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.471 |
| EFC05950.1 | EFC05930.1 | HMPREF9013_0152 | HMPREF9013_0132 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.709 |
| EFC05950.1 | EFC05931.1 | HMPREF9013_0152 | HMPREF9013_0133 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.409 |
| EFC05950.1 | EFC05951.1 | HMPREF9013_0152 | HMPREF9013_0153 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | Hypothetical protein. | 0.832 |
| EFC05950.1 | EFC05952.1 | HMPREF9013_0152 | HMPREF9013_0154 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | 4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037. | 0.901 |
| EFC05950.1 | EFC05953.1 | HMPREF9013_0152 | HMPREF9013_0155 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.852 |
| EFC05950.1 | EFC05971.1 | HMPREF9013_0152 | HMPREF9013_0174 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | Hypothetical protein; Identified by glimmer; putative. | 0.470 |
| EFC05950.1 | EFC06143.1 | HMPREF9013_0152 | HMPREF9013_0838 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | Cobalt transport protein; Identified by match to protein family HMM PF02361. | 0.543 |
| EFC05950.1 | EFC06144.1 | HMPREF9013_0152 | HMPREF9013_0839 | Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. | Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185. | 0.580 |
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