EFC05966.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFC05966.1

Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. (298 aa)

Predicted Functional Partners:

groL

0.989

recX

0.911

EFC05961.1

0.872

cdsA

0.796

rnz

0.792

map

0.752

EFC05964.1

0.746

dut

0.727

EFC05868.1

0.634

EFC05892.1

0.634

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05868.1	EFC05961.1	HMPREF9013_0062	HMPREF9013_0163	Identified by match to protein family HMM PF01569.	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	0.566
EFC05868.1	EFC05966.1	HMPREF9013_0062	HMPREF9013_0168	Identified by match to protein family HMM PF01569.	Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781.	0.634
EFC05868.1	cdsA	HMPREF9013_0062	HMPREF9013_0721	Identified by match to protein family HMM PF01569.	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	0.526
EFC05868.1	recX	HMPREF9013_0062	HMPREF9013_0562	Identified by match to protein family HMM PF01569.	Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.	0.496
EFC05892.1	EFC05961.1	HMPREF9013_0090	HMPREF9013_0163	Identified by match to protein family HMM PF01569.	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	0.566
EFC05892.1	EFC05966.1	HMPREF9013_0090	HMPREF9013_0168	Identified by match to protein family HMM PF01569.	Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781.	0.634
EFC05892.1	cdsA	HMPREF9013_0090	HMPREF9013_0721	Identified by match to protein family HMM PF01569.	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	0.526
EFC05892.1	recX	HMPREF9013_0090	HMPREF9013_0562	Identified by match to protein family HMM PF01569.	Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.	0.496
EFC05961.1	EFC05868.1	HMPREF9013_0163	HMPREF9013_0062	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Identified by match to protein family HMM PF01569.	0.566
EFC05961.1	EFC05892.1	HMPREF9013_0163	HMPREF9013_0090	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Identified by match to protein family HMM PF01569.	0.566
EFC05961.1	EFC05964.1	HMPREF9013_0163	HMPREF9013_0166	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833.	0.752
EFC05961.1	EFC05966.1	HMPREF9013_0163	HMPREF9013_0168	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781.	0.872
EFC05961.1	cdsA	HMPREF9013_0163	HMPREF9013_0721	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.	0.613
EFC05961.1	dut	HMPREF9013_0163	HMPREF9013_0164	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.789
EFC05961.1	map	HMPREF9013_0163	HMPREF9013_0165	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.	0.753
EFC05961.1	recX	HMPREF9013_0163	HMPREF9013_0562	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.	0.636
EFC05961.1	rnz	HMPREF9013_0163	HMPREF9013_0167	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.	0.747
EFC05964.1	EFC05961.1	HMPREF9013_0166	HMPREF9013_0163	CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833.	Phospholipase, patatin family; Identified by match to protein family HMM PF01734.	0.752
EFC05964.1	EFC05966.1	HMPREF9013_0166	HMPREF9013_0168	CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833.	Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781.	0.746
EFC05964.1	dut	HMPREF9013_0166	HMPREF9013_0164	CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833.	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.752