Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05961.1 | EFC05964.1 | HMPREF9013_0163 | HMPREF9013_0166 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | 0.752 |
| EFC05961.1 | EFC05966.1 | HMPREF9013_0163 | HMPREF9013_0168 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | 0.872 |
| EFC05961.1 | EFC05967.1 | HMPREF9013_0163 | HMPREF9013_0169 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | Hypothetical protein. | 0.458 |
| EFC05961.1 | dut | HMPREF9013_0163 | HMPREF9013_0164 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.789 |
| EFC05961.1 | map | HMPREF9013_0163 | HMPREF9013_0165 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.753 |
| EFC05961.1 | rnz | HMPREF9013_0163 | HMPREF9013_0167 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.747 |
| EFC05964.1 | EFC05961.1 | HMPREF9013_0166 | HMPREF9013_0163 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | 0.752 |
| EFC05964.1 | EFC05966.1 | HMPREF9013_0166 | HMPREF9013_0168 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | 0.746 |
| EFC05964.1 | EFC05967.1 | HMPREF9013_0166 | HMPREF9013_0169 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | Hypothetical protein. | 0.469 |
| EFC05964.1 | dut | HMPREF9013_0166 | HMPREF9013_0164 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.752 |
| EFC05964.1 | map | HMPREF9013_0166 | HMPREF9013_0165 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.814 |
| EFC05964.1 | rnz | HMPREF9013_0166 | HMPREF9013_0167 | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.750 |
| EFC05966.1 | EFC05961.1 | HMPREF9013_0168 | HMPREF9013_0163 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | 0.872 |
| EFC05966.1 | EFC05964.1 | HMPREF9013_0168 | HMPREF9013_0166 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | 0.746 |
| EFC05966.1 | EFC05967.1 | HMPREF9013_0168 | HMPREF9013_0169 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | Hypothetical protein. | 0.484 |
| EFC05966.1 | dut | HMPREF9013_0168 | HMPREF9013_0164 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. | 0.727 |
| EFC05966.1 | map | HMPREF9013_0168 | HMPREF9013_0165 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.752 |
| EFC05966.1 | rnz | HMPREF9013_0168 | HMPREF9013_0167 | Lipid kinase, YegS/Rv2252/BmrU family; Identified by match to protein family HMM PF00781. | Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.792 |
| EFC05967.1 | EFC05961.1 | HMPREF9013_0169 | HMPREF9013_0163 | Hypothetical protein. | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. | 0.458 |
| EFC05967.1 | EFC05964.1 | HMPREF9013_0169 | HMPREF9013_0166 | Hypothetical protein. | CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833. | 0.469 |
page 1 of 3