Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05984.1 | EFC05985.1 | HMPREF9013_0187 | HMPREF9013_0188 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.996 |
| EFC05984.1 | EFC05986.1 | HMPREF9013_0187 | HMPREF9013_0189 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.995 |
| EFC05984.1 | EFC05987.1 | HMPREF9013_0187 | HMPREF9013_0190 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.477 |
| EFC05985.1 | EFC05984.1 | HMPREF9013_0188 | HMPREF9013_0187 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.996 |
| EFC05985.1 | EFC05986.1 | HMPREF9013_0188 | HMPREF9013_0189 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.998 |
| EFC05985.1 | EFC05987.1 | HMPREF9013_0188 | HMPREF9013_0190 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.477 |
| EFC05986.1 | EFC05984.1 | HMPREF9013_0189 | HMPREF9013_0187 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.995 |
| EFC05986.1 | EFC05985.1 | HMPREF9013_0189 | HMPREF9013_0188 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.998 |
| EFC05986.1 | EFC05987.1 | HMPREF9013_0189 | HMPREF9013_0190 | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.477 |
| EFC05987.1 | EFC05984.1 | HMPREF9013_0190 | HMPREF9013_0187 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.477 |
| EFC05987.1 | EFC05985.1 | HMPREF9013_0190 | HMPREF9013_0188 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.477 |
| EFC05987.1 | EFC05986.1 | HMPREF9013_0190 | HMPREF9013_0189 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.477 |
| EFC05987.1 | EFC05988.1 | HMPREF9013_0190 | HMPREF9013_0191 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | Carboxypeptidase Taq (M32) metallopeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. | 0.433 |
| EFC05987.1 | EFC06275.1 | HMPREF9013_0190 | HMPREF9013_0980 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. | 0.531 |
| EFC05987.1 | cmk | HMPREF9013_0190 | HMPREF9013_0472 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017. | 0.506 |
| EFC05987.1 | nadE | HMPREF9013_0190 | HMPREF9013_0225 | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.460 |
| EFC05988.1 | EFC05987.1 | HMPREF9013_0191 | HMPREF9013_0190 | Carboxypeptidase Taq (M32) metallopeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.433 |
| EFC06275.1 | EFC05987.1 | HMPREF9013_0980 | HMPREF9013_0190 | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.531 |
| cmk | EFC05987.1 | HMPREF9013_0472 | HMPREF9013_0190 | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.506 |
| nadE | EFC05987.1 | HMPREF9013_0225 | HMPREF9013_0190 | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | Ketopantoate reductase PanE/ApbA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02558. | 0.460 |