EFC05996.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFC05996.1

Identified by match to protein family HMM PF03009. (576 aa)

Predicted Functional Partners:

EFC05317.1

0.946

EFC05868.1

0.873

EFC05892.1

0.873

pgsA

0.799

EFC05995.1

0.685

adh

0.685

EFC05628.1

0.658

dnaK

0.625

EFC05247.1

0.610

EFC05341.1

0.596

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05247.1	EFC05996.1	HMPREF9013_0531	HMPREF9013_0199	Thiamine diphosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378.	Identified by match to protein family HMM PF03009.	0.610
EFC05317.1	EFC05628.1	HMPREF9013_0602	HMPREF9013_1332	Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	0.614
EFC05317.1	EFC05996.1	HMPREF9013_0602	HMPREF9013_0199	Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.	Identified by match to protein family HMM PF03009.	0.946
EFC05317.1	adh	HMPREF9013_0602	HMPREF9013_0669	Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.	Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.466
EFC05341.1	EFC05996.1	HMPREF9013_1366	HMPREF9013_0199	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF03009.	0.596
EFC05628.1	EFC05317.1	HMPREF9013_1332	HMPREF9013_0602	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.	0.614
EFC05628.1	EFC05868.1	HMPREF9013_1332	HMPREF9013_0062	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Identified by match to protein family HMM PF01569.	0.520
EFC05628.1	EFC05892.1	HMPREF9013_1332	HMPREF9013_0090	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Identified by match to protein family HMM PF01569.	0.595
EFC05628.1	EFC05996.1	HMPREF9013_1332	HMPREF9013_0199	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Identified by match to protein family HMM PF03009.	0.658
EFC05628.1	adh	HMPREF9013_1332	HMPREF9013_0669	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.643
EFC05628.1	dnaK	HMPREF9013_1332	HMPREF9013_0216	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.518
EFC05868.1	EFC05628.1	HMPREF9013_0062	HMPREF9013_1332	Identified by match to protein family HMM PF01569.	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	0.520
EFC05868.1	EFC05996.1	HMPREF9013_0062	HMPREF9013_0199	Identified by match to protein family HMM PF01569.	Identified by match to protein family HMM PF03009.	0.873
EFC05868.1	pgsA	HMPREF9013_0062	HMPREF9013_0769	Identified by match to protein family HMM PF01569.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.632
EFC05892.1	EFC05628.1	HMPREF9013_0090	HMPREF9013_1332	Identified by match to protein family HMM PF01569.	Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.	0.595
EFC05892.1	EFC05996.1	HMPREF9013_0090	HMPREF9013_0199	Identified by match to protein family HMM PF01569.	Identified by match to protein family HMM PF03009.	0.873
EFC05892.1	pgsA	HMPREF9013_0090	HMPREF9013_0769	Identified by match to protein family HMM PF01569.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.632
EFC05995.1	EFC05996.1	HMPREF9013_0198	HMPREF9013_0199	Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.	Identified by match to protein family HMM PF03009.	0.685
EFC05995.1	adh	HMPREF9013_0198	HMPREF9013_0669	Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.	Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.443
EFC05995.1	dnaK	HMPREF9013_0198	HMPREF9013_0216	Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.949