Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05328.1 | EFC06027.1 | HMPREF9013_1352 | HMPREF9013_0230 | NLPA lipoprotein; Identified by match to protein family HMM PF03180; Belongs to the nlpA lipoprotein family. | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | 0.596 |
| EFC05531.1 | EFC06027.1 | HMPREF9013_1234 | HMPREF9013_0230 | RNA polymerase sigma factor, sigma-70 family. | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | 0.534 |
| EFC05930.1 | EFC06027.1 | HMPREF9013_0132 | HMPREF9013_0230 | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | 0.531 |
| EFC06026.1 | EFC06027.1 | HMPREF9013_0229 | HMPREF9013_0230 | Hypothetical protein. | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | 0.900 |
| EFC06026.1 | EFC06028.1 | HMPREF9013_0229 | HMPREF9013_0231 | Hypothetical protein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.804 |
| EFC06026.1 | adh | HMPREF9013_0229 | HMPREF9013_0669 | Hypothetical protein. | Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.452 |
| EFC06026.1 | nifJ | HMPREF9013_0229 | HMPREF9013_0578 | Hypothetical protein. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.514 |
| EFC06027.1 | EFC05328.1 | HMPREF9013_0230 | HMPREF9013_1352 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | NLPA lipoprotein; Identified by match to protein family HMM PF03180; Belongs to the nlpA lipoprotein family. | 0.596 |
| EFC06027.1 | EFC05531.1 | HMPREF9013_0230 | HMPREF9013_1234 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | RNA polymerase sigma factor, sigma-70 family. | 0.534 |
| EFC06027.1 | EFC05930.1 | HMPREF9013_0230 | HMPREF9013_0132 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | ABC-2 type transporter; Identified by match to protein family HMM PF01061. | 0.531 |
| EFC06027.1 | EFC06026.1 | HMPREF9013_0230 | HMPREF9013_0229 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Hypothetical protein. | 0.900 |
| EFC06027.1 | EFC06028.1 | HMPREF9013_0230 | HMPREF9013_0231 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.999 |
| EFC06027.1 | adh | HMPREF9013_0230 | HMPREF9013_0669 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.599 |
| EFC06027.1 | msrA | HMPREF9013_0230 | HMPREF9013_1398 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.597 |
| EFC06027.1 | nifJ | HMPREF9013_0230 | HMPREF9013_0578 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.774 |
| EFC06027.1 | ohrR | HMPREF9013_0230 | HMPREF9013_1022 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Organic hydroperoxide resistance transcriptional regulator; Identified by match to protein family HMM PF01047. | 0.578 |
| EFC06027.1 | potA | HMPREF9013_0230 | HMPREF9013_0642 | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. | 0.958 |
| EFC06028.1 | EFC06026.1 | HMPREF9013_0231 | HMPREF9013_0229 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Hypothetical protein. | 0.804 |
| EFC06028.1 | EFC06027.1 | HMPREF9013_0231 | HMPREF9013_0230 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069. | 0.999 |
| EFC06028.1 | adh | HMPREF9013_0231 | HMPREF9013_0669 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; match to protein family HMM PF01761; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.443 |
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