STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05641.1Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (410 aa)    
Predicted Functional Partners:
EFC05643.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
 0.983
EFC05642.1
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.955
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
 
 0.872
EFC05650.1
Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
  
 
 0.813
EFC06326.1
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408.
 
 
 0.793
EFC06006.1
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408.
 
 
 0.792
EFC05971.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.675
EFC05647.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
  
  
 0.669
EFC05646.1
Hypothetical protein.
  
 
 0.660
EFC06466.1
Acetyltransferase, GNAT family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583.
  
 
 0.646
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.