EFC05645.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFC05645.1

Identified by match to protein family HMM PF04991. (320 aa)

Predicted Functional Partners:

EFC05647.1

0.935

EFC05646.1

0.844

EFC05644.1

0.831

EFC05650.1

0.824

EFC05648.1

0.718

EFC05643.1

0.634

EFC05649.1

0.594

EFC05642.1

0.544

EFC05641.1

0.463

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05641.1	EFC05642.1	HMPREF9013_0246	HMPREF9013_0247	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	0.955
EFC05641.1	EFC05643.1	HMPREF9013_0246	HMPREF9013_0248	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.983
EFC05641.1	EFC05644.1	HMPREF9013_0246	HMPREF9013_0249	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Identified by match to protein family HMM PF04991.	0.463
EFC05641.1	EFC05645.1	HMPREF9013_0246	HMPREF9013_0250	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Identified by match to protein family HMM PF04991.	0.463
EFC05641.1	EFC05646.1	HMPREF9013_0246	HMPREF9013_0251	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Hypothetical protein.	0.660
EFC05641.1	EFC05647.1	HMPREF9013_0246	HMPREF9013_0252	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.	0.669
EFC05641.1	EFC05648.1	HMPREF9013_0246	HMPREF9013_0253	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	O-antigen polymerase; Identified by match to protein family HMM PF04932.	0.590
EFC05641.1	EFC05650.1	HMPREF9013_0246	HMPREF9013_0255	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.	0.813
EFC05642.1	EFC05641.1	HMPREF9013_0247	HMPREF9013_0246	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.955
EFC05642.1	EFC05643.1	HMPREF9013_0247	HMPREF9013_0248	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.977
EFC05642.1	EFC05644.1	HMPREF9013_0247	HMPREF9013_0249	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Identified by match to protein family HMM PF04991.	0.576
EFC05642.1	EFC05645.1	HMPREF9013_0247	HMPREF9013_0250	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Identified by match to protein family HMM PF04991.	0.544
EFC05642.1	EFC05646.1	HMPREF9013_0247	HMPREF9013_0251	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Hypothetical protein.	0.685
EFC05642.1	EFC05647.1	HMPREF9013_0247	HMPREF9013_0252	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.	0.804
EFC05642.1	EFC05648.1	HMPREF9013_0247	HMPREF9013_0253	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	O-antigen polymerase; Identified by match to protein family HMM PF04932.	0.842
EFC05642.1	EFC05650.1	HMPREF9013_0247	HMPREF9013_0255	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.	0.445
EFC05643.1	EFC05641.1	HMPREF9013_0248	HMPREF9013_0246	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.983
EFC05643.1	EFC05642.1	HMPREF9013_0248	HMPREF9013_0247	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	0.977
EFC05643.1	EFC05644.1	HMPREF9013_0248	HMPREF9013_0249	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	Identified by match to protein family HMM PF04991.	0.634
EFC05643.1	EFC05645.1	HMPREF9013_0248	HMPREF9013_0250	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	Identified by match to protein family HMM PF04991.	0.634