STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC05369.1Identified by match to protein family HMM PF07811. (189 aa)    
Predicted Functional Partners:
EFC05370.1
Hypothetical protein; Identified by glimmer; putative.
       0.790
EFC05371.1
Hypothetical protein; Identified by glimmer; putative.
       0.787
cpaB
Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.
       0.707
EFC05368.1
Flp/Fap pilin component; Identified by match to protein family HMM PF04964.
       0.655
EFC05373.1
Hypothetical protein; Identified by glimmer; putative.
       0.647
EFC05374.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
       0.645
EFC05376.1
Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.
       0.519
EFC05365.1
Hypothetical protein.
       0.509
EFC05366.1
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
       0.509
EFC05367.1
Hypothetical protein; Identified by glimmer; putative.
       0.509
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.