Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05368.1 | EFC05369.1 | HMPREF9013_0302 | HMPREF9013_0303 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Identified by match to protein family HMM PF07811. | 0.655 |
| EFC05368.1 | EFC05370.1 | HMPREF9013_0302 | HMPREF9013_0304 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Hypothetical protein; Identified by glimmer; putative. | 0.817 |
| EFC05368.1 | EFC05371.1 | HMPREF9013_0302 | HMPREF9013_0305 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Hypothetical protein; Identified by glimmer; putative. | 0.779 |
| EFC05368.1 | EFC05373.1 | HMPREF9013_0302 | HMPREF9013_0307 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Hypothetical protein; Identified by glimmer; putative. | 0.587 |
| EFC05368.1 | EFC05374.1 | HMPREF9013_0302 | HMPREF9013_0308 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | 0.724 |
| EFC05368.1 | EFC05376.1 | HMPREF9013_0302 | HMPREF9013_0310 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482. | 0.671 |
| EFC05368.1 | EFC05377.1 | HMPREF9013_0302 | HMPREF9013_0311 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482. | 0.621 |
| EFC05368.1 | EFC05378.1 | HMPREF9013_0302 | HMPREF9013_0312 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Putative ACR, COG1430; Identified by match to protein family HMM PF02643. | 0.474 |
| EFC05368.1 | EFC05379.1 | HMPREF9013_0302 | HMPREF9013_0313 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.427 |
| EFC05368.1 | cpaB | HMPREF9013_0302 | HMPREF9013_0306 | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177. | 0.886 |
| EFC05369.1 | EFC05368.1 | HMPREF9013_0303 | HMPREF9013_0302 | Identified by match to protein family HMM PF07811. | Flp/Fap pilin component; Identified by match to protein family HMM PF04964. | 0.655 |
| EFC05369.1 | EFC05370.1 | HMPREF9013_0303 | HMPREF9013_0304 | Identified by match to protein family HMM PF07811. | Hypothetical protein; Identified by glimmer; putative. | 0.790 |
| EFC05369.1 | EFC05371.1 | HMPREF9013_0303 | HMPREF9013_0305 | Identified by match to protein family HMM PF07811. | Hypothetical protein; Identified by glimmer; putative. | 0.787 |
| EFC05369.1 | EFC05373.1 | HMPREF9013_0303 | HMPREF9013_0307 | Identified by match to protein family HMM PF07811. | Hypothetical protein; Identified by glimmer; putative. | 0.647 |
| EFC05369.1 | EFC05374.1 | HMPREF9013_0303 | HMPREF9013_0308 | Identified by match to protein family HMM PF07811. | Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. | 0.645 |
| EFC05369.1 | EFC05376.1 | HMPREF9013_0303 | HMPREF9013_0310 | Identified by match to protein family HMM PF07811. | Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482. | 0.519 |
| EFC05369.1 | EFC05377.1 | HMPREF9013_0303 | HMPREF9013_0311 | Identified by match to protein family HMM PF07811. | Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482. | 0.498 |
| EFC05369.1 | EFC05378.1 | HMPREF9013_0303 | HMPREF9013_0312 | Identified by match to protein family HMM PF07811. | Putative ACR, COG1430; Identified by match to protein family HMM PF02643. | 0.500 |
| EFC05369.1 | EFC05379.1 | HMPREF9013_0303 | HMPREF9013_0313 | Identified by match to protein family HMM PF07811. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.494 |
| EFC05369.1 | cpaB | HMPREF9013_0303 | HMPREF9013_0306 | Identified by match to protein family HMM PF07811. | Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177. | 0.707 |
page 1 of 6