Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFC05397.1Acyltransferase; Identified by match to protein family HMM PF01757. (356 aa)    
Predicted Functional Partners:
EFC05396.1
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040; Belongs to the UbiA prenyltransferase family.
       0.782
EFC05395.1
Hypothetical protein; Identified by glimmer; putative.
       0.584
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.581
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.561
gtcA
Cell wall teichoic acid glycosylation protein GtcA; Identified by match to protein family HMM PF04138.
       0.493
EFC05394.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
       0.489
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.486
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
       0.486
EFC05393.1
Identified by match to protein family HMM PF01189.
       0.486
EFC05398.1
Hypothetical protein.
       0.463
Your Current Organism:
Bulleidia extructa
NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219
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