Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC05167.1 | EFC05408.1 | HMPREF9013_0448 | HMPREF9013_0344 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM TIGR01906. | 0.413 |
| EFC05167.1 | EFC05766.1 | HMPREF9013_0448 | HMPREF9013_0689 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein. | 0.714 |
| EFC05206.1 | EFC05408.1 | HMPREF9013_0488 | HMPREF9013_0344 | Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | Identified by match to protein family HMM TIGR01906. | 0.432 |
| EFC05206.1 | EFC05766.1 | HMPREF9013_0488 | HMPREF9013_0689 | Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | Hypothetical protein. | 0.570 |
| EFC05262.1 | EFC05408.1 | HMPREF9013_0546 | HMPREF9013_0344 | Hypothetical protein. | Identified by match to protein family HMM TIGR01906. | 0.512 |
| EFC05262.1 | EFC05766.1 | HMPREF9013_0546 | HMPREF9013_0689 | Hypothetical protein. | Hypothetical protein. | 0.772 |
| EFC05408.1 | EFC05167.1 | HMPREF9013_0344 | HMPREF9013_0448 | Identified by match to protein family HMM TIGR01906. | Hypothetical protein; Identified by glimmer; putative. | 0.413 |
| EFC05408.1 | EFC05206.1 | HMPREF9013_0344 | HMPREF9013_0488 | Identified by match to protein family HMM TIGR01906. | Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | 0.432 |
| EFC05408.1 | EFC05262.1 | HMPREF9013_0344 | HMPREF9013_0546 | Identified by match to protein family HMM TIGR01906. | Hypothetical protein. | 0.512 |
| EFC05408.1 | EFC05409.1 | HMPREF9013_0344 | HMPREF9013_0345 | Identified by match to protein family HMM TIGR01906. | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.792 |
| EFC05408.1 | EFC05410.1 | HMPREF9013_0344 | HMPREF9013_0346 | Identified by match to protein family HMM TIGR01906. | Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042. | 0.588 |
| EFC05408.1 | EFC05412.1 | HMPREF9013_0344 | HMPREF9013_0348 | Identified by match to protein family HMM TIGR01906. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.401 |
| EFC05408.1 | EFC05766.1 | HMPREF9013_0344 | HMPREF9013_0689 | Identified by match to protein family HMM TIGR01906. | Hypothetical protein. | 0.619 |
| EFC05408.1 | gltX | HMPREF9013_0344 | HMPREF9013_0341 | Identified by match to protein family HMM TIGR01906. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.534 |
| EFC05408.1 | rdgB | HMPREF9013_0344 | HMPREF9013_0343 | Identified by match to protein family HMM TIGR01906. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.792 |
| EFC05409.1 | EFC05408.1 | HMPREF9013_0345 | HMPREF9013_0344 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Identified by match to protein family HMM TIGR01906. | 0.792 |
| EFC05409.1 | EFC05410.1 | HMPREF9013_0345 | HMPREF9013_0346 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042. | 0.602 |
| EFC05409.1 | gltX | HMPREF9013_0345 | HMPREF9013_0341 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.502 |
| EFC05409.1 | rdgB | HMPREF9013_0345 | HMPREF9013_0343 | Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.825 |
| EFC05410.1 | EFC05408.1 | HMPREF9013_0346 | HMPREF9013_0344 | Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042. | Identified by match to protein family HMM TIGR01906. | 0.588 |
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