EFC05429.1 protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFC05429.1

Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (153 aa)

Predicted Functional Partners:

nifJ

0.919

nadE

0.866

EFC05881.1

0.816

EFC05426.1

0.775

mltG

0.775

udk

0.775

EFC05425.1

0.773

EFC05427.1

0.773

EFC06270.1

0.720

greA

0.704

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05425.1	EFC05426.1	HMPREF9013_0362	HMPREF9013_0363	Identified by match to protein family HMM PF06135.	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	0.959
EFC05425.1	EFC05427.1	HMPREF9013_0362	HMPREF9013_0364	Identified by match to protein family HMM PF06135.	Identified by match to protein family HMM PF06949.	0.773
EFC05425.1	EFC05429.1	HMPREF9013_0362	HMPREF9013_0366	Identified by match to protein family HMM PF06135.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	0.773
EFC05425.1	greA	HMPREF9013_0362	HMPREF9013_0368	Identified by match to protein family HMM PF06135.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.758
EFC05425.1	mltG	HMPREF9013_0362	HMPREF9013_0365	Identified by match to protein family HMM PF06135.	YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.817
EFC05425.1	udk	HMPREF9013_0362	HMPREF9013_0367	Identified by match to protein family HMM PF06135.	Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.	0.811
EFC05426.1	EFC05425.1	HMPREF9013_0363	HMPREF9013_0362	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	Identified by match to protein family HMM PF06135.	0.959
EFC05426.1	EFC05427.1	HMPREF9013_0363	HMPREF9013_0364	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	Identified by match to protein family HMM PF06949.	0.773
EFC05426.1	EFC05429.1	HMPREF9013_0363	HMPREF9013_0366	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	0.775
EFC05426.1	greA	HMPREF9013_0363	HMPREF9013_0368	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.758
EFC05426.1	mltG	HMPREF9013_0363	HMPREF9013_0365	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.826
EFC05426.1	udk	HMPREF9013_0363	HMPREF9013_0367	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.	0.811
EFC05427.1	EFC05425.1	HMPREF9013_0364	HMPREF9013_0362	Identified by match to protein family HMM PF06949.	Identified by match to protein family HMM PF06135.	0.773
EFC05427.1	EFC05426.1	HMPREF9013_0364	HMPREF9013_0363	Identified by match to protein family HMM PF06949.	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	0.773
EFC05427.1	EFC05429.1	HMPREF9013_0364	HMPREF9013_0366	Identified by match to protein family HMM PF06949.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	0.773
EFC05427.1	greA	HMPREF9013_0364	HMPREF9013_0368	Identified by match to protein family HMM PF06949.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.697
EFC05427.1	mltG	HMPREF9013_0364	HMPREF9013_0365	Identified by match to protein family HMM PF06949.	YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.773
EFC05427.1	udk	HMPREF9013_0364	HMPREF9013_0367	Identified by match to protein family HMM PF06949.	Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.	0.773
EFC05429.1	EFC05425.1	HMPREF9013_0366	HMPREF9013_0362	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Identified by match to protein family HMM PF06135.	0.773
EFC05429.1	EFC05426.1	HMPREF9013_0366	HMPREF9013_0363	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.	0.775