udk protein (Bulleidia extructa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Bulleidia extructa

NCBI taxonomy Id: 679192
Other names: B. extructa W1219, Bulleidia extructa W1219, Bulleidia extructa str. W1219, Bulleidia extructa strain W1219

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFC05429.1	cdd	HMPREF9013_0366	HMPREF9013_0515	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.428
EFC05429.1	cmk	HMPREF9013_0366	HMPREF9013_0472	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.	0.493
EFC05429.1	maf	HMPREF9013_0366	HMPREF9013_0073	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.535
EFC05429.1	mltG	HMPREF9013_0366	HMPREF9013_0365	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.773
EFC05429.1	pyrH	HMPREF9013_0366	HMPREF9013_0730	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.427
EFC05429.1	udk	HMPREF9013_0366	HMPREF9013_0367	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.	0.837
EFC05429.1	upp	HMPREF9013_0366	HMPREF9013_1437	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.	Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.	0.432
EFC05450.1	EFC06384.1	HMPREF9013_0387	HMPREF9013_1092	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	0.756
EFC05450.1	cdd	HMPREF9013_0387	HMPREF9013_0515	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.918
EFC05450.1	cmk	HMPREF9013_0387	HMPREF9013_0472	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.	0.918
EFC05450.1	maf	HMPREF9013_0387	HMPREF9013_0073	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.551
EFC05450.1	pyrH	HMPREF9013_0387	HMPREF9013_0730	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.918
EFC05450.1	pyrR	HMPREF9013_0387	HMPREF9013_0983	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Phosphoribosyl transferase domain protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.	0.915
EFC05450.1	udk	HMPREF9013_0387	HMPREF9013_0367	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.	0.835
EFC05450.1	upp	HMPREF9013_0387	HMPREF9013_1437	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.	0.918
EFC06384.1	EFC05450.1	HMPREF9013_1092	HMPREF9013_0387	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01473; match to protein family HMM PF01832.	0.756
EFC06384.1	cdd	HMPREF9013_1092	HMPREF9013_0515	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.851
EFC06384.1	cmk	HMPREF9013_1092	HMPREF9013_0472	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017.	0.646
EFC06384.1	maf	HMPREF9013_1092	HMPREF9013_0073	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.	0.646
EFC06384.1	pyrH	HMPREF9013_1092	HMPREF9013_0730	5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.664